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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126258840_126260687_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
126258840 - 126260687
Intron Length:
1848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TCTACCAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
ATTCACTTAATT
Flanking Amino Acid:
LQNQFSQYLKDSFSLDNVIK
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
61.6
0.26
1
56
37.8
Minor 5ss
38.8
-1.3
3
52.9
44.3
Minor BPS
72
0.77
1.4
85.34
34.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020855
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023969
126258726 - 126260819
2094