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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126281284_126282247_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
126281284 - 126282247
Intron Length:
964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TCAGTGTTAATT
Flanking Amino Acid:
TVFKTQNSILRKLYGDEMFV
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83
23.8
Major BPS
84.4
0.85
1
84
34.5
Major PPT
79.8
0.67
1
77.7
40.7
Minor 5ss
41.2
-1
2.8
49.4
41.3
Minor BPS
49.3
0.03
2.1
67.41
44.2

Associated Gene:

Gene:
CTPS2
Ensembl Gene ID:
ENSAPLG00000012743
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013342
126228663 - 126295409
66747