Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126282304_126284013_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

126282304 - 126284013

Intron Length:

1710

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGCTCT

5'SS Class:

strong_major

3'SS Sequence:

TTCAATATTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

ATTATTATAATT

Flanking Amino Acid:

VEERHRHRYEVNPELTHSFE

Intron Amino Acid Position:

596

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.95

0.8

81.4

33.4

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

77.6

0.62

0.9

39.9

Minor 5ss

46.5

-0.4

2.8

65.7

45.4

Minor BPS

56.9

0.29

1.6

75.47

35.2

Associated Gene:

Gene:

CTPS2

Ensembl Gene ID:

ENSAPLG00000012743

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013342

126228663 - 126295409

66747