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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126284111_126287442_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
126284111 - 126287442
Intron Length:
3332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
ATCTGTCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTCTTTGACA
Flanking Amino Acid:
GNRMEIIELENHPYFVGVQF
Intron Amino Acid Position:
628

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
79
35.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
75.7
0.58
0.9
70
35.9
Minor 5ss
41.6
-0.9
2.8
51.4
39.2
Minor BPS
85.7
1.12
0.9
90.32
23.8

Associated Gene:

Gene:
CTPS2
Ensembl Gene ID:
ENSAPLG00000012743
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013342
126228663 - 126295409
66747