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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126287588_126295292_F

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
126287588 - 126295292
Intron Length:
7705

Sequence Information:

Terminal Dinucleotides:
GT-TT
5'SS Sequence:
AAG|GTAATCTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTATTGCTTT|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TATTTTCTAACT
Flanking Amino Acid:
YLQRGCKLSPSNSDSYSDLS
Intron Amino Acid Position:
676

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
80.7
34.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
20.9
-1.6
4.1
43.6
46.8
Minor 5ss
49.9
-0
2.8
73.7
42.8
Minor BPS
68.2
0.65
1.6
85.44
34.4

Associated Gene:

Gene:
CTPS2
Ensembl Gene ID:
ENSAPLG00000012743
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013342
126228663 - 126295409
66747