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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126442320_126448448_R

Intron Information:

Intron Rank:
154244
Intron Class:
major
Intron Phase:
Intron Coordinates:
126442320 - 126448448
Intron Length:
6129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATGAT
U12 Branch Point Sequence:
AGTATGATGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.8
83.2
28.5
Major BPS
66.9
0.42
1.3
59.7
46.7
Major PPT
90.1
0.9
0.7
88.4
27.9
Minor 5ss
36.2
-1.6
2.7
42.6
38.5
Minor BPS
42.3
-0.6
2.2
54.74
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030447
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023191
126441425 - 126448606
7182