About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126477974_126497931_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
126477974 - 126497931
Intron Length:
19958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TCTTTCTTATTT
Flanking Amino Acid:
VFTLTALSADRYKAIVRPME
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
86.8
0.83
0.7
86.1
27.7
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
69.5
0.69
1.5
82.89
39.2

Associated Gene:

Gene:
GRPR
Ensembl Gene ID:
ENSAPLG00000013731
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043607
126474001 - 126512248
38248
ENSAPLT00000014311
126474001 - 126512248
38248