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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126499022_126511930_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
126499022 - 126511930
Intron Length:
12909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAC
U12 Branch Point Sequence:
TTTCTCCTACCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
65.7
0.39
1.1
67.4
36.7
Major PPT
76.5
0.6
0.8
69.6
35.8
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
53.1
0.08
2
72.3
38.7

Associated Gene:

Gene:
GRPR
Ensembl Gene ID:
ENSAPLG00000013731
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043607
126474001 - 126512248
38248
ENSAPLT00000014311
126474001 - 126512248
38248