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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126576857_126581636_R

Intron Information:

Intron Rank:
150156
Intron Class:
major
Intron Phase:
Intron Coordinates:
126576857 - 126581636
Intron Length:
4780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TGTAATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
81.4
33.4
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
83.5
0.75
0.7
77.6
36.1
Minor 5ss
44.4
-0.6
3.2
67
44.3
Minor BPS
49.9
0.07
1.8
70.36
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028364
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031421
126567964 - 126581653
13690