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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126586883_126588785_F

Intron Information:

Intron Rank:
137180
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
126586883 - 126588785
Intron Length:
1903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCCAAAAA
5'SS Class:
weak_major
3'SS Sequence:
TATCTTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
CTGCCTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.9
0.21
1.3
61.3
39.2
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
81.8
0.72
0.8
76.3
31.9
Minor 5ss
26.5
-2.7
2.9
31.7
42.2
Minor BPS
59
0.36
1.7
72.84
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023886
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021882
126586169 - 126589745
3577