About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126588903_126589227_F

Intron Information:

Intron Rank:
137181
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
126588903 - 126589227
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTGTA
5'SS Class:
major
3'SS Sequence:
TTAAACTAAAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76
33
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
49.9
-0
1.2
50.4
41.7
Minor 5ss
42.4
-0.8
3.1
58.1
46.4
Minor BPS
67.7
0.63
1.6
83.79
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023886
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021882
126586169 - 126589745
3577