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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126589329_126589451_F

Intron Information:

Intron Rank:
137182
Intron Class:
major
Intron Phase:
Intron Coordinates:
126589329 - 126589451
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TCCTTTACTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAA
U12 Branch Point Sequence:
CCTTCCTTTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71.3
40.3
Major BPS
65.8
0.39
1
73.3
31.3
Major PPT
82.4
0.73
0.8
77.4
29.7
Minor 5ss
38
-1.4
2.8
52.3
44.3
Minor BPS
73.4
0.82
1.6
84
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023886
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021882
126586169 - 126589745
3577