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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126592076_126611004_F

Intron Information:

Intron Rank:
137186
Intron Class:
major
Intron Phase:
Intron Coordinates:
126592076 - 126611004
Intron Length:
18929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TCCATTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTTCACTCAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
75.8
35
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
74.8
0.56
1
72
37.8
Minor 5ss
45.1
-0.5
2.8
60
44.7
Minor BPS
53.1
0.18
2
79.51
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023886
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043977
126591700 - 126611032
19333