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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126642883_126651093_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
126642883 - 126651093
Intron Length:
8211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TGCTGCTTGATT
Flanking Amino Acid:
AIEQADLLQESQNEDWGGLS
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
73.9
0.59
1
81
30.2
Major PPT
81.8
0.71
0.9
76.5
37.7
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
60.3
0.4
1.8
75.43
41.9

Associated Gene:

Gene:
AP1S2
Ensembl Gene ID:
ENSAPLG00000013854
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035866
126634172 - 126651751
17580
ENSAPLT00000035748
126633682 - 126661364
27683
ENSAPLT00000014433
126634172 - 126661633
27462