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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126669363_126669404_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
126669363 - 126669404
Intron Length:
42

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTTTGTTTC
5'SS Class:
weak_major
3'SS Sequence:
GACTGCCAGGCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTTTTTAAAG
Flanking Amino Acid:
NACTVIMLHVSLALFSGRWY
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.5
0.18
1.2
61.7
37.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
53.3
0.08
1.1
47.3
40.4
Minor 5ss
49.8
-0
2.3
68.6
36
Minor BPS
65.8
0.36
1.5
67.62
40.4

Associated Gene:

Gene:
ZRSR2
Ensembl Gene ID:
ENSAPLG00000016990
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044618
126668117 - 126675969
7853