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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126672173_126675732_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
126672173 - 126675732
Intron Length:
3560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCAGT
5'SS Class:
strong_major
3'SS Sequence:
TGTAACTATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCTTTGTAACT
Flanking Amino Acid:
IKTGSCRFGDRCSRKHNYPT
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
74.6
41.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
69
0.43
1
59.1
46
Minor 5ss
41.2
-1
2.9
58.4
45.7
Minor BPS
62.2
0.46
2
82.56
39.6

Associated Gene:

Gene:
ZRSR2
Ensembl Gene ID:
ENSAPLG00000016990
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044618
126668117 - 126675969
7853