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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126683707_126683793_R

Intron Information:

Intron Rank:
137387
Intron Class:
major
Intron Phase:
Intron Coordinates:
126683707 - 126683793
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CGTCTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
GATTGTTTAGAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
77.9
36.8
Major BPS
79.2
0.72
1
75
40
Major PPT
81.6
0.71
0.8
79.8
32.1
Minor 5ss
36.4
-1.5
3.3
46.1
43.6
Minor BPS
47.7
-0
2
67.23
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021408
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023637
126683492 - 126685466
1975