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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126683874_126684724_R

Intron Information:

Intron Rank:
137388
Intron Class:
major
Intron Phase:
Intron Coordinates:
126683874 - 126684724
Intron Length:
851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCATCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
AAATTCTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
84.1
0.77
0.7
81.6
29.1
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
51
0.11
1.8
68.77
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021408
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023637
126683492 - 126685466
1975