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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126691900_126697018_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
126691900 - 126697018
Intron Length:
5119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TCTTCCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TCTTCCTTTACA
Flanking Amino Acid:
SIKAALGDNAYAWDTNEEYL
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
89.1
0.88
0.6
83.6
24.8
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
77.4
0.86
1.5
83.52
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020227
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040171
126690613 - 126711457
20845