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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126697105_126703289_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
126697105 - 126703289
Intron Length:
6185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGCATC
5'SS Class:
major
3'SS Sequence:
TAACCATCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TATTTTTTAACC
Flanking Amino Acid:
MRRYSSKTTTQISNVLLCNV
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
70.3
40.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
66.3
0.37
0.9
59.6
36.4
Minor 5ss
46.1
-0.4
2.9
66.8
38
Minor BPS
80.7
0.94
1
82.95
29.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020227
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040171
126690613 - 126711457
20845