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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126728051_126728763_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
126728051 - 126728763
Intron Length:
713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTACGACAA
5'SS Class:
major
3'SS Sequence:
TTCTTTTTTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TCTTTTTTGAAG
Flanking Amino Acid:
STGCLPAHLLGDMWGRFWTN
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
58.9
42
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
83.4
0.75
0.9
86.2
25.3
Minor 5ss
29.8
-2.3
3.2
30.3
42.8
Minor BPS
58.2
0.11
1.5
62.4
40.1

Associated Gene:

Gene:
ACE2
Ensembl Gene ID:
ENSAPLG00000014477
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015165
126720102 - 126736364
16263