Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126755431_126756196_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

126755431 - 126756196

Intron Length:

766

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAGGAAGA

5'SS Class:

major

3'SS Sequence:

TTTGTCCCACTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAA

U12 Branch Point Sequence:

TTTTGCTAAAGG

Flanking Amino Acid:

KVPDTASLGNGVWELKREEI

Intron Amino Acid Position:

384

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.6

0.56

1.1

64.4

41.6

Major BPS

70.1

0.5

1.1

69.9

35.3

Major PPT

70.9

0.47

0.9

64.5

37.8

Minor 5ss

31.6

-2.1

3.2

42.3

Minor BPS

49.4

-0.1

2.4

66.67

47.1

Associated Gene:

Gene:

BMX

Ensembl Gene ID:

ENSAPLG00000015413

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016140

126748733 - 126775057

26325