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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126757185_126758384_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
126757185 - 126758384
Intron Length:
1200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCCTGCAT
5'SS Class:
weak_major
3'SS Sequence:
TTTTAATAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTATTTTAATA
Flanking Amino Acid:
AQAEQLLRQKGKEGAFLVRK
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.9
0.12
1.4
53.5
45
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
68.7
0.42
1
68.9
41
Minor 5ss
26.8
-2.7
3.3
39.2
46
Minor BPS
69.1
0.59
1.2
73.73
31.7

Associated Gene:

Gene:
BMX
Ensembl Gene ID:
ENSAPLG00000015413
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020937
126748733 - 126775057
26325
ENSAPLT00000016140
126748733 - 126775057
26325