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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126759056_126760093_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
126759056 - 126760093
Intron Length:
1038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTCACAATT
Flanking Amino Acid:
RKLSLNDDEPRENSSVNEHT
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
0.9
72.6
33.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
85.5
0.8
0.7
81.4
30.6
Minor 5ss
27.4
-2.6
2.8
31.6
42.6
Minor BPS
61.9
0.45
1.8
84.92
35.5

Associated Gene:

Gene:
BMX
Ensembl Gene ID:
ENSAPLG00000015413
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020937
126748733 - 126775057
26325
ENSAPLT00000016140
126748733 - 126775057
26325