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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126762393_126766801_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
126762393 - 126766801
Intron Length:
4409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTCAA
5'SS Class:
major
3'SS Sequence:
TCTGTCTTCAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTGTCTTCAAAG
Flanking Amino Acid:
KPLPPVPQTLLRRRSLPQVL
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
66.8
40.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
69.7
0.44
1
70.3
34.2
Minor 5ss
32.3
-2
3.1
37
42.7
Minor BPS
51.2
-0.1
1.8
56.49
45.1

Associated Gene:

Gene:
BMX
Ensembl Gene ID:
ENSAPLG00000015413
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016140
126748733 - 126775057
26325
ENSAPLT00000020937
126748733 - 126775057
26325