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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126770587_126772759_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
126770587 - 126772759
Intron Length:
2173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CAACCTCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCTGTCTCAACC
Flanking Amino Acid:
TPVARQYPFQIVYKGGLLYV
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1.1
73.5
37.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
71.9
0.49
0.9
61.8
39.4
Minor 5ss
30.9
-2.2
2.7
35.9
40.8
Minor BPS
60.8
0.32
1.7
69.77
42

Associated Gene:

Gene:
BMX
Ensembl Gene ID:
ENSAPLG00000015413
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020937
126748733 - 126775057
26325
ENSAPLT00000016140
126748733 - 126775057
26325