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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126794223_126796737_F

Intron Information:

Intron Rank:
142124
Intron Class:
major
Intron Phase:
Intron Coordinates:
126794223 - 126796737
Intron Length:
2515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGACT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CCTTCTTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.8
81.2
32.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
86.6
0.82
0.7
84.2
23.8
Minor 5ss
29.5
-2.4
3.1
40.4
45.5
Minor BPS
66.7
0.6
1.7
78.9
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026524
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019691
126792973 - 126797737
4765
ENSAPLT00000044713
126793669 - 126796804
3136