About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126815989_126850612_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
126815989 - 126850612
Intron Length:
34624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GCTTTCTGACTT
Flanking Amino Acid:
GCADVQKRTSLSALERS
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
92.7
0.96
0.6
85.4
29.3
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
51.5
0.12
1.7
68.72
42.7

Associated Gene:

Gene:
VEGFD
Ensembl Gene ID:
ENSAPLG00000013929
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039788
126815968 - 126858158
42191