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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126826241_126850612_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
126826241 - 126850612
Intron Length:
24372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTAAC
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GCTTTCTGACTT
Flanking Amino Acid:
MNSASTDKRTSLSALERS
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.3
74
36.6
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
92.7
0.96
0.6
85.4
29.3
Minor 5ss
37.5
-1.4
2.5
45.3
42.8
Minor BPS
51.5
0.12
1.7
68.72
42.7

Associated Gene:

Gene:
VEGFD
Ensembl Gene ID:
ENSAPLG00000013929
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025123
126826118 - 126862294
36177