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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126833445_126850612_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
126833445 - 126850612
Intron Length:
17168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GCTTTCTGACTT
Flanking Amino Acid:
GSEYENGSVKRTSLSALERS
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
32.7
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
92.7
0.96
0.6
85.4
29.3
Minor 5ss
33
-1.9
3.5
48.2
47.9
Minor BPS
51.5
0.12
1.7
68.72
42.7

Associated Gene:

Gene:
VEGFD
Ensembl Gene ID:
ENSAPLG00000013929
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027645
126833280 - 126862294
29015