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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126850824_126854600_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
126850824 - 126854600
Intron Length:
3777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GTGTTCTCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
TTTGCCATGATT
Flanking Amino Acid:
AAFYDIDTLKVIDEEWQKTQ
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.1
34.7
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
78.9
0.65
0.9
70.1
41.4
Minor 5ss
26.1
-2.7
3.2
32
42.6
Minor BPS
63.7
0.51
1.7
84.01
37.1

Associated Gene:

Gene:
VEGFD
Ensembl Gene ID:
ENSAPLG00000013929
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014531
126808231 - 126862294
54064
ENSAPLT00000039788
126815968 - 126858158
42191
ENSAPLT00000027645
126833280 - 126862294
29015
ENSAPLT00000025123
126826118 - 126862294
36177