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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126857190_126857971_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
126857190 - 126857971
Intron Length:
782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TATTTTTAATTT
Flanking Amino Acid:
RRSVQYPEEDGCPFANKLCH
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
73.2
39.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
89.6
0.89
0.6
84.8
30
Minor 5ss
40.1
-1.1
2.8
44.4
43.5
Minor BPS
50.1
0.08
1.8
71.82
40.2

Associated Gene:

Gene:
VEGFD
Ensembl Gene ID:
ENSAPLG00000013929
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027645
126833280 - 126862294
29015
ENSAPLT00000025123
126826118 - 126862294
36177
ENSAPLT00000014531
126808231 - 126862294
54064
ENSAPLT00000039788
126815968 - 126858158
42191