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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126874229_126874805_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
126874229 - 126874805
Intron Length:
577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGGG
5'SS Class:
major
3'SS Sequence:
TCTCTTCTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTGTCCTAAATT
Flanking Amino Acid:
VVVSRLVYRKGIDLLSGIIP
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
60.6
44.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
81.3
0.7
0.7
80.8
24.5
Minor 5ss
28.7
-2.4
3.5
38.3
46.7
Minor BPS
73.8
0.83
1.6
87.53
38.7

Associated Gene:

Gene:
PIGA
Ensembl Gene ID:
ENSAPLG00000018586
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025963
126872724 - 126882283
9560