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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126876220_126877749_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
126876220 - 126877749
Intron Length:
1530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACATAT
U12 Branch Point Sequence:
TTTCTTTCAAAG
Flanking Amino Acid:
IVEAASCGLQVVSTKVGGIP
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
57.6
0.19
1
53
33.7
Major PPT
73.2
0.52
1
74.3
34.3
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
51.6
-0
1.7
62.03
39.8

Associated Gene:

Gene:
PIGA
Ensembl Gene ID:
ENSAPLG00000018586
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025963
126872724 - 126882283
9560