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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126877957_126879592_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
126877957 - 126879592
Intron Length:
1636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TCACTCTTAAGA
Flanking Amino Acid:
WRDVAERTEKVYERVAGEKV
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
82.5
29.7
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
85.8
0.8
0.6
84.8
22.8
Minor 5ss
47.1
-0.3
2.5
59.7
39.1
Minor BPS
58.6
0.27
1.7
65.02
41.4

Associated Gene:

Gene:
PIGA
Ensembl Gene ID:
ENSAPLG00000018586
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025963
126872724 - 126882283
9560