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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126889272_126892557_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
126889272 - 126892557
Intron Length:
3286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGCC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAG
U12 Branch Point Sequence:
TTCCCCTCAGGC
Flanking Amino Acid:
LLSLKTLIAQGFNVNLVTTD
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
33.7
Major BPS
48.4
-0.1
1.5
56.9
40.5
Major PPT
79.4
0.66
0.8
72.7
32.1
Minor 5ss
31
-2.2
3.4
42.5
44.5
Minor BPS
46.5
-0.2
2
60.11
44.8

Associated Gene:

Gene:
ASB11
Ensembl Gene ID:
ENSAPLG00000013543
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014107
126885715 - 126898554
12840