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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126892666_126895091_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
126892666 - 126895091
Intron Length:
2426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
CCTGCCGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TTATTCTGAGCG
Flanking Amino Acid:
AKLLLENGAQVNAATIDGIT
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
73.1
0.52
0.9
68.6
37.2
Minor 5ss
37
-1.5
3.2
50.1
46.5
Minor BPS
55.7
0.04
1.8
65.08
42.4

Associated Gene:

Gene:
ASB11
Ensembl Gene ID:
ENSAPLG00000013543
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014107
126885715 - 126898554
12840