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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126895243_126895460_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
126895243 - 126895460
Intron Length:
218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCACCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTTTTCACCA
Flanking Amino Acid:
ASPIHEAVKRGHRECMEVLL
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
75.8
34.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
72
0.5
0.9
65.9
34.7
Minor 5ss
41.4
-1
3.3
58.9
45.9
Minor BPS
51.8
0.05
1.8
66.33
40.9

Associated Gene:

Gene:
ASB11
Ensembl Gene ID:
ENSAPLG00000013543
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014107
126885715 - 126898554
12840