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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126896743_126897748_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
126896743 - 126897748
Intron Length:
1006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGTT
5'SS Class:
strong_major
3'SS Sequence:
TATATTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTTATT
Flanking Amino Acid:
KIEQALLLREGPASLGQLCR
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.3
34.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.3
0.8
0.8
77.3
41.4
Minor 5ss
34.5
-1.8
3.9
55
49.2
Minor BPS
63.1
0.49
1.8
84.66
35.8

Associated Gene:

Gene:
ASB11
Ensembl Gene ID:
ENSAPLG00000013543
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014107
126885715 - 126898554
12840