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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126914090_126922009_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
126914090 - 126922009
Intron Length:
7920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTCTCTTTATAC
Flanking Amino Acid:
ATSPSLLLMRDFVSDWSPLH
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
81.4
32.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
84.3
0.77
0.8
79.9
31.1
Minor 5ss
35.6
-1.6
2.7
37.5
40.1
Minor BPS
60.9
0.32
1.7
71.15
40.4

Associated Gene:

Gene:
ASB9
Ensembl Gene ID:
ENSAPLG00000013447
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014025
126913897 - 126932120
18224