About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126922090_126922943_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
126922090 - 126922943
Intron Length:
854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCCCTC
5'SS Class:
weak_major
3'SS Sequence:
ATTATTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTT
Flanking Amino Acid:
LLTLKKLISQGSDVNLVTTD
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.2
59.7
45.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.5
0.78
0.8
81.9
35.1
Minor 5ss
64.2
0.48
2.3
76.8
38.6
Minor BPS
62.5
0.47
1.8
84.55
36.3

Associated Gene:

Gene:
ASB9
Ensembl Gene ID:
ENSAPLG00000013447
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014025
126913897 - 126932120
18224