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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126953495_126953920_R

Intron Information:

Intron Rank:
151055
Intron Class:
major
Intron Phase:
Intron Coordinates:
126953495 - 126953920
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
CCATCTCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAT
U12 Branch Point Sequence:
TCTCTCCCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.2
39.6
Major BPS
59.9
0.25
1.3
70.1
37
Major PPT
78
0.63
0.8
69
36.8
Minor 5ss
28
-2.5
3
33.4
41.6
Minor BPS
44.6
-0.3
2
66.08
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028769
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021756
126952618 - 126954067
1450