About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_126958662_126959087_F

Intron Information:

Intron Rank:
132385
Intron Class:
major
Intron Phase:
Intron Coordinates:
126958662 - 126959087
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CCATCTCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAT
U12 Branch Point Sequence:
TCTCTCCCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
71.5
33.9
Major BPS
59.9
0.25
1.3
70.1
37
Major PPT
78
0.63
0.8
69
36.8
Minor 5ss
28
-2.5
3
33.3
41.7
Minor BPS
44.6
-0.3
2
66.08
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021130
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021228
126958452 - 126959964
1513