Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127024529_127028626_F

Intron Information:

Intron Rank:

132190

Intron Class:

major

Intron Phase:

Intron Coordinates:

127024529 - 127028626

Intron Length:

4098

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATGAG

5'SS Class:

strong_major

3'SS Sequence:

AAATCTCTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTACAT

U12 Branch Point Sequence:

TTTACTTTTACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.83

0.9

74.7

35.6

Major BPS

82.7

0.81

0.9

89.3

26.1

Major PPT

74.9

0.56

0.9

70.7

39.9

Minor 5ss

31.4

-2.1

3.2

39.6

46.4

Minor BPS

68.6

0.58

1.6

80.14

35.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021028

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032018

127023806 - 127032666

8861