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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127028783_127032571_F

Intron Information:

Intron Rank:
132191
Intron Class:
major
Intron Phase:
Intron Coordinates:
127028783 - 127032571
Intron Length:
3789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TCACTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CCTTCTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.2
35.8
Major BPS
80
0.75
1
78.6
31
Major PPT
82.9
0.74
0.8
80.5
31.2
Minor 5ss
26.7
-2.7
3
28.5
38.4
Minor BPS
65.7
0.57
1.8
78.9
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021028
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032018
127023806 - 127032666
8861