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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1270560_1273893_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1270560 - 1273893
Intron Length:
3334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGAG
5'SS Class:
major
3'SS Sequence:
TTTTTCCCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CCTTCCTAACCC
Flanking Amino Acid:
QGATVTMALNSEAAAHAVAT
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
64.1
42.1
Major BPS
72
0.55
1
71.8
31.4
Major PPT
85.3
0.79
0.7
78
30.8
Minor 5ss
27.5
-2.6
3.6
36.9
47.7
Minor BPS
53.5
0.09
2
65.55
46.5

Associated Gene:

Gene:
NRF1
Ensembl Gene ID:
ENSAPLG00000003164
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047126
1267098 - 1289780
22683
ENSAPLT00000042267
1268512 - 1289780
21269
ENSAPLT00000003275
1266696 - 1289780
23085