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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127112940_127113445_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
127112940 - 127113445
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAATTTTAAATT
Flanking Amino Acid:
AKTNEDLHMQLTHLLQINKR
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
77.1
31.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.9
0.85
0.7
85.8
27
Minor 5ss
34.1
-1.8
3.5
47.4
47.9
Minor BPS
58.7
0.35
1.6
73.01
38.5

Associated Gene:

Gene:
MOSPD2
Ensembl Gene ID:
ENSAPLG00000013235
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013798
127112793 - 127145480
32688