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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127113549_127114669_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
127113549 - 127114669
Intron Length:
1121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCATA
5'SS Class:
strong_major
3'SS Sequence:
ACCCTTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CCTTTTTTAACC
Flanking Amino Acid:
EVPRTKVMEHRLRCHVIESS
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
83.2
30.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
66
0.36
1
61.8
37.3
Minor 5ss
37.5
-1.4
3
48.1
47.6
Minor BPS
72.5
0.69
1.2
72.92
38.9

Associated Gene:

Gene:
MOSPD2
Ensembl Gene ID:
ENSAPLG00000013235
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013798
127112793 - 127145480
32688