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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127115533_127116347_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
127115533 - 127116347
Intron Length:
815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
CTTTTTGTATTT
Flanking Amino Acid:
NVTKNVVAFKVRTTAPEKYR
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
87.7
26.2
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
82.2
0.73
0.9
82
34.8
Minor 5ss
39.6
-1.2
2.9
54
43.3
Minor BPS
47.4
-0.1
2.2
70.13
42.3

Associated Gene:

Gene:
MOSPD2
Ensembl Gene ID:
ENSAPLG00000013235
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013798
127112793 - 127145480
32688