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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_127123060_127127998_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
127123060 - 127127998
Intron Length:
4939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
CCTTATGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TCTTTTATAAAT
Flanking Amino Acid:
EYLPPHMGGTDSFKYSYPPL
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1.1
80.4
34
Major BPS
78.6
0.71
1
78.6
31
Major PPT
75.3
0.57
0.9
72.8
37.1
Minor 5ss
42.2
-0.9
2.9
61.3
43
Minor BPS
58.5
0.34
1.7
77.39
39.2

Associated Gene:

Gene:
MOSPD2
Ensembl Gene ID:
ENSAPLG00000013235
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013798
127112793 - 127145480
32688